Variant report

Variant	rs1651015
Chromosome Location	chr16:12740902-12740903
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1078157	0.88[EUR][1000 genomes]
rs11075135	0.88[EUR][1000 genomes]
rs11075136	0.87[EUR][1000 genomes]
rs11075138	0.83[EUR][1000 genomes]
rs12445715	0.83[EUR][1000 genomes]
rs12600248	0.88[EUR][1000 genomes]
rs1560110	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1560111	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1651010	0.86[EUR][1000 genomes]
rs1713484	0.80[EUR][1000 genomes]
rs1713489	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2434463	0.89[EUR][1000 genomes]
rs2865585	0.89[EUR][1000 genomes]
rs2865586	0.88[EUR][1000 genomes]
rs34953655	0.87[EUR][1000 genomes]
rs4374158	0.93[EUR][1000 genomes]
rs4781303	0.94[EUR][1000 genomes]
rs4781304	0.94[EUR][1000 genomes]
rs4781305	0.88[EUR][1000 genomes]
rs4781306	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4781309	0.87[EUR][1000 genomes]
rs4781310	0.87[EUR][1000 genomes]
rs4781312	0.87[EUR][1000 genomes]
rs59468878	0.87[EUR][1000 genomes]
rs7193365	0.93[EUR][1000 genomes]
rs7197012	0.89[EUR][1000 genomes]
rs7197205	0.89[EUR][1000 genomes]
rs7198104	0.88[EUR][1000 genomes]
rs7198933	0.93[EUR][1000 genomes]
rs7204517	0.93[EUR][1000 genomes]
rs7359474	0.87[EUR][1000 genomes]
rs890877	0.86[EUR][1000 genomes]
rs890878	0.87[EUR][1000 genomes]
rs890879	0.87[EUR][1000 genomes]
rs890881	0.86[EUR][1000 genomes]
rs9652605	0.88[EUR][1000 genomes]
rs9652606	0.88[EUR][1000 genomes]
rs9927892	0.89[EUR][1000 genomes]
rs9928677	0.86[EUR][1000 genomes]
rs9930512	0.89[EUR][1000 genomes]
rs9939106	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv571463	chr16:12367791-12783535	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1051242	chr16:12482972-12897243	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv542749	chr16:12482972-12897243	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1035581	chr16:12516946-12863700	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1051607	chr16:12522130-13347676	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv542750	chr16:12522130-13347676	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv1041381	chr16:12724989-12751796	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1053617	chr16:12730958-12871639	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv869284	chr16:12735729-13533462	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12739800-12741600	Enhancers	Primary hematopoietic stem cells	blood
2	chr16:12739800-12741800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr16:12739800-12742000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr16:12740000-12741000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr16:12740000-12741000	Enhancers	Placenta	Placenta
6	chr16:12740000-12741200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:12740000-12741200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:12740000-12741200	Enhancers	Brain Cingulate Gyrus	brain
9	chr16:12740000-12741200	Enhancers	HepG2	liver
10	chr16:12740000-12741400	Enhancers	Liver	Liver
11	chr16:12740000-12741600	Enhancers	Hela-S3	cervix
12	chr16:12740000-12741600	Enhancers	K562	blood
13	chr16:12740200-12741000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr16:12740200-12741000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr16:12740200-12741000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr16:12740200-12741000	Enhancers	GM12878-XiMat	blood
17	chr16:12740200-12741000	Flanking Active TSS	HUVEC	blood vessel
18	chr16:12740200-12741000	Enhancers	Osteobl	bone
19	chr16:12740200-12741200	Enhancers	Brain Hippocampus Middle	brain
20	chr16:12740200-12741800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr16:12740200-12741800	Enhancers	Brain Angular Gyrus	brain
22	chr16:12740200-12741800	Enhancers	Brain Substantia Nigra	brain
23	chr16:12740400-12741000	Enhancers	Primary T cells from cord blood	blood
24	chr16:12740400-12741000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr16:12740400-12741000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr16:12740400-12741000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr16:12740400-12741000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr16:12740400-12741000	Enhancers	Spleen	Spleen
29	chr16:12740400-12741000	Flanking Active TSS	A549	lung
30	chr16:12740400-12741200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr16:12740600-12741000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr16:12740600-12741000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr16:12740600-12741000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr16:12740600-12741000	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr16:12740600-12741000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr16:12740600-12741000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr16:12740600-12741000	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr16:12740600-12741000	Enhancers	Fetal Thymus	thymus
39	chr16:12740600-12741000	Enhancers	Gastric	stomach
40	chr16:12740600-12741000	Enhancers	Left Ventricle	heart
41	chr16:12740600-12741000	Enhancers	Right Atrium	heart
42	chr16:12740600-12741000	Enhancers	Dnd41	blood
43	chr16:12740600-12741000	Enhancers	NHDF-Ad	bronchial
44	chr16:12740600-12741600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr16:12740600-12745800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr16:12740800-12741000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
47	chr16:12740800-12752000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr16:12740800-12752200	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links