Variant report

Variant	rs1652145
Chromosome Location	chr12:30415799-30415800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10843679	0.89[ASN][1000 genomes]
rs10843682	0.89[ASN][1000 genomes]
rs10843683	0.89[ASN][1000 genomes]
rs10843685	0.89[ASN][1000 genomes]
rs11050748	0.89[ASN][1000 genomes]
rs11050749	0.89[ASN][1000 genomes]
rs11050753	0.89[ASN][1000 genomes]
rs11050755	0.89[ASN][1000 genomes]
rs11050756	0.85[ASN][1000 genomes]
rs11050757	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11050758	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11050759	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1114543	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1594225	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1594226	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1617930	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1652148	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1652152	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1652153	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1652154	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1731485	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1731487	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1731488	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1731512	0.89[ASN][1000 genomes]
rs1731513	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1731514	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1731524	0.86[ASN][1000 genomes]
rs17522050	0.89[ASN][1000 genomes]
rs1820886	0.89[ASN][1000 genomes]
rs1825526	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1835255	0.89[ASN][1000 genomes]
rs1960779	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2082063	0.88[ASN][1000 genomes]
rs2564541	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2564544	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2564546	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2564552	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2700039	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2700040	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2703355	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4031705	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4931303	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4931304	0.89[ASN][1000 genomes]
rs59104050	0.87[ASN][1000 genomes]
rs59708543	0.89[ASN][1000 genomes]
rs765116	0.89[ASN][1000 genomes]
rs765117	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs765118	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs765119	0.89[ASN][1000 genomes]
rs7959978	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7960086	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7974720	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9788210	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv821695	chr12:30287314-30450174	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv430465	chr12:30377630-30422833	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30409200-30416400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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