The 2.0 version of rSNPBase

Variant report

Variant rs1654345
Chromosome Location chr19:38524288-38524289
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38495400-38526400 Weak transcription Ovary ovary
2 chr19:38506600-38526200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr19:38508600-38537000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr19:38514600-38530200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr19:38514800-38526400 Weak transcription Left Ventricle heart
6 chr19:38514800-38537000 Weak transcription Colonic Mucosa Colon
7 chr19:38515000-38524600 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr19:38515000-38526600 Weak transcription Right Ventricle heart
9 chr19:38515600-38524800 Weak transcription Fetal Kidney kidney
10 chr19:38515800-38526000 Weak transcription HepG2 liver
11 chr19:38516200-38528000 Weak transcription Fetal Brain Female brain
12 chr19:38516400-38524400 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr19:38516800-38524400 Weak transcription Fetal Muscle Trunk muscle
14 chr19:38516800-38526600 Weak transcription HMEC breast
15 chr19:38516800-38536200 Weak transcription Spleen Spleen
16 chr19:38517000-38524600 Weak transcription Brain Anterior Caudate brain
17 chr19:38517000-38526800 Weak transcription Brain Angular Gyrus brain
18 chr19:38517000-38526800 Weak transcription Brain Inferior Temporal Lobe brain
19 chr19:38517000-38530800 Weak transcription NHEK skin
20 chr19:38517000-38537000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr19:38517200-38524600 Weak transcription Brain Cingulate Gyrus brain
22 chr19:38517200-38526200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr19:38517400-38526200 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr19:38517400-38526400 Weak transcription Psoas Muscle Psoas
25 chr19:38519000-38524600 Weak transcription Hela-S3 cervix
26 chr19:38519000-38525000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr19:38520400-38526200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr19:38521600-38525000 Weak transcription Gastric stomach
29 chr19:38521800-38526000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr19:38521800-38526200 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr19:38521800-38526200 Weak transcription NHLF lung
32 chr19:38521800-38526200 Enhancers Osteobl bone
33 chr19:38521800-38537000 Weak transcription Esophagus oesophagus
34 chr19:38521800-38538400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr19:38521800-38538400 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr19:38521800-38548600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr19:38522000-38525000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr19:38522000-38526400 Weak transcription Brain Substantia Nigra brain
39 chr19:38522000-38526600 Enhancers Muscle Satellite Cultured Cells --
40 chr19:38522000-38536600 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr19:38522000-38553600 Weak transcription Stomach Smooth Muscle stomach
42 chr19:38522200-38524600 Weak transcription Duodenum Mucosa Duodenum
43 chr19:38522200-38526600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr19:38522200-38527800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr19:38522200-38529000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr19:38522200-38537200 Weak transcription Thymus Thymus
47 chr19:38522400-38524400 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr19:38522400-38524600 Weak transcription Fetal Intestine Large intestine
49 chr19:38522400-38525800 Weak transcription NHDF-Ad bronchial
50 chr19:38522400-38526400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015