Variant report

Variant	rs166175
Chromosome Location	chr5:76062954-76062955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13166089	0.83[AMR][1000 genomes]
rs153312	0.95[ASN][1000 genomes]
rs173669	0.92[ASN][1000 genomes]
rs185156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs250725	0.92[ASN][1000 genomes]
rs250728	0.91[ASN][1000 genomes]
rs250755	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs250756	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs250758	0.92[ASN][1000 genomes]
rs250760	0.92[ASN][1000 genomes]
rs250761	0.92[ASN][1000 genomes]
rs250763	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs250764	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs253085	0.94[ASN][1000 genomes]
rs429332	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs458380	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv965590	chr5:76061083-76081416	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs166175	F2R	cis	Muscle Skeletal	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76056200-76067000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:76059400-76067400	Weak transcription	HepG2	liver
3	chr5:76060400-76063000	Enhancers	Osteobl	bone
4	chr5:76060600-76070200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:76060800-76063400	Enhancers	NHDF-Ad	bronchial
6	chr5:76061400-76063000	Enhancers	NHLF	lung
7	chr5:76061600-76074800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:76062000-76063200	Enhancers	NHEK	skin
9	chr5:76062000-76063800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:76062600-76063000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:76062600-76063000	Enhancers	A549	lung
12	chr5:76062600-76063200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:76062600-76063200	Enhancers	HUVEC	blood vessel
14	chr5:76062600-76063800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:76062800-76067200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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