Variant report

Variant	rs166241
Chromosome Location	chr5:94096010-94096011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11744169	0.87[EUR][1000 genomes]
rs255333	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255339	1.00[CEU][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs255377	0.90[EUR][1000 genomes]
rs700571	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs166241	C5orf36	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94083000-94108000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
4	chr5:94085200-94105800	Weak transcription	Fetal Thymus	thymus
5	chr5:94086200-94101800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:94087400-94100400	Weak transcription	Spleen	Spleen
7	chr5:94089600-94107800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94094600-94098400	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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