Variant report

Variant	rs1662574
Chromosome Location	chr17:38533101-38533102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2586112	0.95[ASN][1000 genomes]
rs2715556	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2715557	0.94[ASN][1000 genomes]
rs471692	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs477220	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505633	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs506728	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510336	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517047	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs532299	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558068	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv908223	chr17:38530799-38609187	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38521400-38541800	Weak transcription	A549	lung
2	chr17:38523800-38546200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:38530000-38536400	Weak transcription	K562	blood
4	chr17:38531400-38542600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:38531400-38543800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr17:38531600-38543000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr17:38531600-38543400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:38531600-38544600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr17:38531600-38545000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr17:38531800-38544000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr17:38532600-38533800	Enhancers	Primary hematopoietic stem cells	blood
12	chr17:38532600-38544400	Weak transcription	HSMM	muscle
13	chr17:38533000-38533200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr17:38533000-38533600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr17:38533000-38533800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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