Variant report
| Variant | rs166272 |
|---|---|
| Chromosome Location | chr16:52063940-52063941 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr16:52063569-52064037 | H1-neurons | neurons: | n/a | n/a |
| 2 | POLR2A | chr16:52063604-52063950 | H1-neurons | neurons: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| C16orf97 | TF binding region |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs1362426 | 1.00[AMR][1000 genomes] |
| rs16950931 | 1.00[AMR][1000 genomes] |
| rs256597 | 1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap] |
| rs3095554 | 1.00[AMR][1000 genomes] |
| rs3095560 | 1.00[AMR][1000 genomes] |
| rs33338 | 1.00[MKK][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv492248 | chr16:51681902-52456082 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | esv34024 | chr16:51878565-52316530 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
