Variant report

Variant	rs166298
Chromosome Location	chr5:14777135-14777136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14774249..14779166-chr5:14785300..14788951,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154122	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1004673	0.83[EUR][1000 genomes]
rs13175317	0.82[EUR][1000 genomes]
rs1374080	0.80[EUR][1000 genomes]
rs1550826	0.82[EUR][1000 genomes]
rs17251715	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17251763	0.98[ASN][1000 genomes]
rs17266101	0.84[EUR][1000 genomes]
rs17317514	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401985	0.84[EUR][1000 genomes]
rs258223	0.85[EUR][1000 genomes]
rs33101	0.84[EUR][1000 genomes]
rs35554212	0.84[EUR][1000 genomes]
rs35842463	0.84[EUR][1000 genomes]
rs40970	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55954907	0.85[EUR][1000 genomes]
rs61169618	0.85[EUR][1000 genomes]
rs6884206	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv948447	chr5:14771247-14852610	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14729200-14791000	Weak transcription	Small Intestine	intestine
2	chr5:14746000-14790200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr5:14753600-14790000	Weak transcription	Ovary	ovary
4	chr5:14753600-14801600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:14756800-14779000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:14756800-14780200	Weak transcription	Fetal Stomach	stomach
7	chr5:14756800-14781200	Weak transcription	Thymus	Thymus
8	chr5:14758800-14783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:14759200-14790200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:14761000-14777800	Weak transcription	HSMMtube	muscle
11	chr5:14766600-14780000	Weak transcription	Fetal Intestine Large	intestine
12	chr5:14767400-14809800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr5:14768400-14789800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr5:14768600-14779400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr5:14768600-14790000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:14768600-14790200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr5:14768600-14790200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr5:14768600-14790200	Weak transcription	Dnd41	blood
19	chr5:14768800-14779000	Weak transcription	Primary T cells from cord blood	blood
20	chr5:14769000-14780800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:14769200-14789400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr5:14769400-14778800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr5:14769400-14790600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:14769400-14790600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:14770200-14777600	Weak transcription	Fetal Brain Male	brain
26	chr5:14771600-14777400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr5:14772600-14778000	Enhancers	HepG2	liver
28	chr5:14773800-14777800	Weak transcription	Aorta	Aorta
29	chr5:14773800-14778000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:14774000-14778200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr5:14774000-14780800	Weak transcription	Brain Angular Gyrus	brain
32	chr5:14774200-14777600	Weak transcription	Fetal Brain Female	brain
33	chr5:14774200-14777800	Enhancers	A549	lung
34	chr5:14774400-14778200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr5:14775200-14779800	Strong transcription	Fetal Intestine Small	intestine
36	chr5:14775400-14777200	Enhancers	Stomach Mucosa	stomach
37	chr5:14775600-14777200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr5:14775600-14778400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr5:14775600-14779600	Enhancers	Left Ventricle	heart
40	chr5:14775600-14783800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr5:14775800-14777600	Weak transcription	Liver	Liver
42	chr5:14775800-14777800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr5:14776000-14780800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr5:14776200-14778000	Weak transcription	Placenta	Placenta
45	chr5:14776400-14777800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr5:14776400-14778000	Weak transcription	Lung	lung
47	chr5:14776400-14780600	Weak transcription	Hela-S3	cervix
48	chr5:14776400-14785400	Weak transcription	Spleen	Spleen
49	chr5:14776600-14777200	Enhancers	Stomach Smooth Muscle	stomach
50	chr5:14776600-14777800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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