Variant report

Variant	rs166462
Chromosome Location	chr10:44858139-44858140
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs266100	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
2	chr10:44848200-44858600	Weak transcription	Psoas Muscle	Psoas
3	chr10:44848200-44864600	Weak transcription	Fetal Kidney	kidney
4	chr10:44848200-44865000	Weak transcription	Osteobl	bone
5	chr10:44848400-44865000	Weak transcription	Right Atrium	heart
6	chr10:44848400-44867400	Weak transcription	Adipose Nuclei	Adipose
7	chr10:44848400-44867600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:44849400-44869000	Weak transcription	Right Ventricle	heart
9	chr10:44849800-44864800	Weak transcription	Left Ventricle	heart
10	chr10:44850600-44877600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:44852600-44858600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:44852800-44858400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:44853000-44858400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:44854000-44858400	Weak transcription	Pancreas	Pancrea
15	chr10:44854000-44858400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:44854000-44865800	Weak transcription	Fetal Intestine Small	intestine
17	chr10:44854200-44858200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:44854200-44862400	Weak transcription	Ovary	ovary
19	chr10:44854200-44867200	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:44854400-44869000	Weak transcription	Brain Substantia Nigra	brain
21	chr10:44854800-44858800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:44854800-44863600	Weak transcription	Fetal Lung	lung
23	chr10:44855000-44858200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:44855400-44858400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:44856200-44865000	Weak transcription	Aorta	Aorta
26	chr10:44856600-44858400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:44857600-44859000	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:44858000-44858800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:44858000-44859200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr10:44858000-44859600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr10:44858000-44860400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:44858000-44864200	Strong transcription	Fetal Stomach	stomach

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