Variant report

Variant	rs1665
Chromosome Location	chr3:60994583-60994584
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13087545	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2752012	chr3:60952040-61016039	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590409	chr3:60952040-61040860	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv34680	chr3:60983280-61052979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1812798	chr3:60984540-60996220	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv2756992	chr3:60993915-61052642	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv948633	chr3:60993915-61171279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60978400-60997600	Weak transcription	Pancreas	Pancrea
2	chr3:60990600-60994600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:60993200-60994600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:60993200-60995000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr3:60993200-60995200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:60993200-60995400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:60993400-60995000	Enhancers	Brain Hippocampus Middle	brain
8	chr3:60993400-60995000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr3:60993600-60995000	Enhancers	Primary B cells from peripheral blood	blood
10	chr3:60993600-60995000	Enhancers	Brain Anterior Caudate	brain
11	chr3:60993600-60995200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:60993800-60994600	Enhancers	Brain Angular Gyrus	brain
13	chr3:60993800-60995000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:60993800-60995000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:60993800-60995200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:60993800-60995200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:60993800-60995200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:60993800-60995200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr3:60994000-60994800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr3:60994000-60995000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:60994000-60995000	Enhancers	Brain Germinal Matrix	brain
22	chr3:60994000-60995000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr3:60994000-60995000	Enhancers	Brain Substantia Nigra	brain
24	chr3:60994000-60995200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr3:60994000-60995200	Enhancers	Primary hematopoietic stem cells	blood
26	chr3:60994200-60994600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:60994400-60994600	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr3:60994400-60994600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr3:60994400-60994800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr3:60994400-60995000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr3:60994400-60995000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr3:60994400-60995200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr3:60994400-60995200	Enhancers	HUES64 Cell Line	embryonic stem cell

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