Variant report

Variant	rs1667748
Chromosome Location	chr3:24300566-24300567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24300206..24302334-chr3:24536691..24538229,2	MCF-7	breast:
2	chr3:24299984..24301754-chr3:24305650..24307661,2	K562	blood:
3	chr3:24296130..24297967-chr3:24299752..24301340,2	MCF-7	breast:
4	chr3:24060176..24062310-chr3:24299277..24301761,2	K562	blood:
5	chr3:24298797..24301703-chr3:24554490..24556064,2	K562	blood:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1910854	1.00[CEU][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24272400-24301400	Weak transcription	Fetal Intestine Large	intestine
2	chr3:24284200-24300600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:24295400-24306400	Weak transcription	HepG2	liver
4	chr3:24296800-24300800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:24296800-24301400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:24297000-24300600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:24298400-24301600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:24298600-24300600	Weak transcription	K562	blood
10	chr3:24299200-24300600	Enhancers	Liver	Liver
11	chr3:24299200-24300600	Enhancers	Colon Smooth Muscle	Colon
12	chr3:24299200-24300600	Enhancers	Stomach Smooth Muscle	stomach
13	chr3:24299200-24300800	Enhancers	Psoas Muscle	Psoas
14	chr3:24299200-24301000	Enhancers	Right Atrium	heart
15	chr3:24299400-24300600	Enhancers	Rectal Smooth Muscle	rectum
16	chr3:24299600-24300600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:24299600-24300800	Enhancers	Left Ventricle	heart
18	chr3:24299600-24301000	Enhancers	Brain Cingulate Gyrus	brain
19	chr3:24299600-24301000	Enhancers	Fetal Lung	lung
20	chr3:24299800-24304000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:24300000-24300600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr3:24300000-24300800	Weak transcription	Fetal Intestine Small	intestine
23	chr3:24300000-24300800	Enhancers	Gastric	stomach
24	chr3:24300000-24301000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr3:24300000-24301200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr3:24300000-24302200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:24300200-24301000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr3:24300200-24301800	Weak transcription	Right Ventricle	heart
29	chr3:24300200-24302000	Enhancers	Fetal Heart	heart
30	chr3:24300400-24301000	Active TSS	Aorta	Aorta
31	chr3:24300400-24301000	Enhancers	NHEK	skin
32	chr3:24300400-24301200	Enhancers	Pancreas	Pancrea

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