Variant report

Variant	rs1669883
Chromosome Location	chr12:42912131-42912132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1629471	1.00[EUR][1000 genomes]
rs1669942	0.88[CEU][hapmap];0.88[TSI][hapmap];0.97[EUR][1000 genomes]
rs1669948	1.00[EUR][1000 genomes]
rs2600929	1.00[EUR][1000 genomes]
rs2600932	0.88[CEU][hapmap]
rs2600933	0.88[CEU][hapmap];0.88[TSI][hapmap];0.97[EUR][1000 genomes]
rs2600934	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs2708031	0.88[CEU][hapmap]
rs2708080	1.00[EUR][1000 genomes]
rs721722	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs73277824	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv832388	chr12:42878328-43087069	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42885400-42913600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:42898400-42914000	Weak transcription	NH-A	brain
3	chr12:42898400-42929000	Weak transcription	Fetal Kidney	kidney
4	chr12:42901600-42940200	Weak transcription	Ovary	ovary
5	chr12:42903000-42913400	Weak transcription	HMEC	breast
6	chr12:42903400-42917800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:42903400-42917800	Weak transcription	HSMMtube	muscle
8	chr12:42906000-42917000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:42906400-42913400	Weak transcription	Osteobl	bone
10	chr12:42909000-42918800	Weak transcription	Lung	lung
11	chr12:42910800-42918200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:42910800-42918400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr12:42910800-42918600	Weak transcription	Fetal Stomach	stomach
14	chr12:42910800-42942000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:42911000-42913400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:42911200-42941800	Weak transcription	Fetal Muscle Leg	muscle
17	chr12:42911600-42914000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr12:42912000-42912400	Strong transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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