Variant report

Variant	rs1670558
Chromosome Location	chr11:73610110-73610111
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73600327..73602691-chr11:73608708..73610968,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10898948	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10898950	0.98[ASN][1000 genomes]
rs11220	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235932	0.83[ASN][1000 genomes]
rs1670545	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1670546	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1792199	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3018335	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4362170	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7105293	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1035977	chr11:73581224-73617653	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73588600-73610200	Weak transcription	Gastric	stomach
2	chr11:73588600-73610200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:73588600-73611200	Weak transcription	Aorta	Aorta
4	chr11:73588800-73610200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:73588800-73610600	Weak transcription	Spleen	Spleen
6	chr11:73588800-73610800	Weak transcription	Lung	lung
7	chr11:73588800-73610800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:73588800-73611200	Weak transcription	Right Ventricle	heart
9	chr11:73588800-73622000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:73588800-73623000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:73588800-73625200	Weak transcription	Small Intestine	intestine
12	chr11:73588800-73630000	Weak transcription	Colonic Mucosa	Colon
13	chr11:73588800-73630200	Weak transcription	HUVEC	blood vessel
14	chr11:73589000-73610200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:73589000-73610200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:73589000-73630200	Weak transcription	Fetal Brain Male	brain
17	chr11:73589200-73611200	Weak transcription	Brain Substantia Nigra	brain
18	chr11:73589400-73629200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:73590000-73610200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:73590000-73611200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:73591200-73610200	Weak transcription	Pancreas	Pancrea
22	chr11:73591400-73610200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:73591400-73610200	Weak transcription	Esophagus	oesophagus
24	chr11:73591600-73618000	Weak transcription	K562	blood
25	chr11:73595600-73610200	Weak transcription	Ovary	ovary
26	chr11:73596000-73640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr11:73598600-73610200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:73598800-73611200	Weak transcription	Hela-S3	cervix
29	chr11:73600400-73610200	Weak transcription	Fetal Lung	lung
30	chr11:73600400-73618000	Weak transcription	Fetal Heart	heart
31	chr11:73600800-73610200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:73601000-73640400	Weak transcription	Stomach Mucosa	stomach
33	chr11:73601600-73610200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:73601600-73630000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:73601800-73611200	Weak transcription	HepG2	liver
36	chr11:73602000-73610200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:73602000-73610600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:73602000-73622800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:73602000-73624000	Weak transcription	Psoas Muscle	Psoas
40	chr11:73602200-73610800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:73602400-73610200	Weak transcription	HSMM	muscle
42	chr11:73602400-73644800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:73602800-73610200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:73603000-73613200	Weak transcription	Brain Germinal Matrix	brain
45	chr11:73603400-73610200	Weak transcription	Adipose Nuclei	Adipose
46	chr11:73603400-73612800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:73603400-73612800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:73604200-73610200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:73604400-73623400	Weak transcription	Fetal Kidney	kidney
50	chr11:73605200-73610200	Weak transcription	Fetal Thymus	thymus

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