Variant report

Variant	rs1670568
Chromosome Location	chr11:73641066-73641067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10751228	1.00[AMR][1000 genomes]
rs2444598	1.00[AMR][1000 genomes]
rs2444600	1.00[AMR][1000 genomes]
rs2512627	1.00[AMR][1000 genomes]
rs2512633	1.00[AMR][1000 genomes]
rs2515090	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28729523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs935987	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs935989	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73602400-73644800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:73615800-73641400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:73617600-73646000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:73618000-73646400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:73618400-73641600	Strong transcription	Placenta	Placenta
6	chr11:73620200-73641400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:73625200-73647200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:73625600-73646400	Strong transcription	Liver	Liver
9	chr11:73626600-73647800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:73627600-73641400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:73628000-73646200	Strong transcription	Fetal Intestine Small	intestine
12	chr11:73628800-73646400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:73630800-73642200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:73631000-73647200	Weak transcription	Psoas Muscle	Psoas
15	chr11:73633200-73642200	Weak transcription	Brain Angular Gyrus	brain
16	chr11:73633200-73652400	Weak transcription	Small Intestine	intestine
17	chr11:73634400-73643800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:73634600-73645600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:73635000-73643600	Strong transcription	Fetal Stomach	stomach
20	chr11:73635000-73644000	Strong transcription	Fetal Intestine Large	intestine
21	chr11:73635000-73646400	Strong transcription	Fetal Muscle Leg	muscle
22	chr11:73635400-73642800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:73637400-73642800	Strong transcription	Lung	lung
24	chr11:73637400-73644000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:73637400-73644200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr11:73637800-73641600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:73637800-73642600	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:73637800-73642600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:73637800-73644200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:73637800-73644400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:73637800-73645600	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:73638000-73641400	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr11:73638000-73641600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:73638000-73645600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:73638800-73642200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:73638800-73647200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:73639000-73645200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:73639000-73653000	Weak transcription	K562	blood
39	chr11:73639200-73642000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr11:73639200-73645600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:73639200-73645600	Weak transcription	NHLF	lung
42	chr11:73639200-73650000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:73639400-73642200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:73639400-73642200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:73639400-73642200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:73639400-73643200	Weak transcription	Fetal Brain Male	brain
47	chr11:73639400-73643600	Weak transcription	Colon Smooth Muscle	Colon
48	chr11:73639400-73643600	Weak transcription	Fetal Lung	lung
49	chr11:73639400-73643800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:73639400-73643800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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