Variant report

Variant	rs167132
Chromosome Location	chr5:57905474-57905475
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs158963	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs158966	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs158989	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs158996	1.00[ASW][hapmap];0.92[CEU][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs159005	1.00[ASW][hapmap];1.00[MKK][hapmap];0.83[AFR][1000 genomes]
rs169706	1.00[ASW][hapmap];0.92[CEU][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.83[AFR][1000 genomes]
rs209681	0.83[AFR][1000 genomes]
rs379849	1.00[ASW][hapmap];1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs167132	CDC20B	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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