Variant report

Variant	rs1671761
Chromosome Location	chr12:120850589-120850590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs206944	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs206955	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs206956	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs206961	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs206962	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs206963	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2859286	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1671761	POP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120840600-120851000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:120840600-120851600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:120850000-120852600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:120850200-120851800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:120850400-120851200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:120850400-120851400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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