Variant report

Variant	rs167189
Chromosome Location	chr3:139295138-139295139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:139295088-139295242	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
NMNAT3	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10935334	0.81[AFR][1000 genomes]
rs2201713	0.82[YRI][hapmap]
rs295465	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3914177	0.90[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949635	chr3:139091219-139367043	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv530058	chr3:139243971-139814419	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139259200-139307000	Weak transcription	Aorta	Aorta
2	chr3:139276000-139299400	Weak transcription	Primary T cells from cord blood	blood
3	chr3:139279400-139296200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:139280200-139321000	Weak transcription	Fetal Brain Female	brain
5	chr3:139281000-139304600	Weak transcription	Brain Angular Gyrus	brain
6	chr3:139284800-139307600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:139288200-139297600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:139291200-139299200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr3:139291200-139299400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:139291600-139352400	Weak transcription	Fetal Intestine Small	intestine
11	chr3:139292000-139297600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:139292600-139296000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:139293200-139296400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:139293200-139297600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:139293200-139298000	Weak transcription	Lung	lung
16	chr3:139293200-139298200	Weak transcription	Psoas Muscle	Psoas
17	chr3:139293200-139304800	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:139293200-139305200	Weak transcription	Spleen	Spleen
19	chr3:139293200-139306000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:139293200-139317000	Weak transcription	Left Ventricle	heart
21	chr3:139293200-139318000	Weak transcription	Brain Anterior Caudate	brain
22	chr3:139293400-139295600	Weak transcription	Fetal Brain Male	brain
23	chr3:139293400-139297800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:139293400-139299000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:139293400-139300800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr3:139293400-139301600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:139293400-139304200	Weak transcription	Liver	Liver
28	chr3:139293400-139304800	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:139293400-139305800	Weak transcription	Brain Substantia Nigra	brain
30	chr3:139293600-139297400	Weak transcription	Ovary	ovary
31	chr3:139293600-139297600	Weak transcription	Fetal Stomach	stomach
32	chr3:139293600-139299600	Weak transcription	Adipose Nuclei	Adipose
33	chr3:139293600-139300800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:139293600-139301200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr3:139293600-139306000	Weak transcription	Right Ventricle	heart
36	chr3:139293800-139295400	Weak transcription	Fetal Lung	lung
37	chr3:139293800-139296600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:139293800-139297600	Weak transcription	Pancreas	Pancrea
39	chr3:139293800-139306600	Weak transcription	Brain Germinal Matrix	brain
40	chr3:139294800-139296400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:139294800-139297600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:139294800-139297600	Weak transcription	Fetal Intestine Large	intestine

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