Variant report

Variant	rs167190
Chromosome Location	chr5:60499287-60499288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10044874	1.00[JPT][hapmap]
rs12186613	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs159373	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs159379	0.96[EUR][1000 genomes]
rs1841504	0.96[EUR][1000 genomes]
rs2545476	0.96[EUR][1000 genomes]
rs2613632	0.96[EUR][1000 genomes]
rs295523	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs295525	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs295526	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs295529	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs295530	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs295538	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs295547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs295548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs295549	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs295550	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs295568	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs295570	0.92[EUR][1000 genomes]
rs295572	0.96[EUR][1000 genomes]
rs295574	0.89[EUR][1000 genomes]
rs295576	0.96[EUR][1000 genomes]
rs295577	0.96[EUR][1000 genomes]
rs295580	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs295581	0.96[EUR][1000 genomes]
rs298624	1.00[CEU][hapmap]
rs298625	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs298626	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs298627	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs298628	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs298630	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs298631	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs498497	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs557092	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs603018	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6876627	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6882613	1.00[JPT][hapmap]
rs9291714	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	esv1845980	chr5:60481408-60511495	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60497000-60499400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:60499000-60499400	Weak transcription	HSMM	muscle

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