Variant report

Variant	rs167581
Chromosome Location	chr15:41766966-41766967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:41766958-41767141	Hela-S3	cervix:	n/a	chr15:41767081-41767099 chr15:41767083-41767104
2	FOXA1	chr15:41766701-41766978	T-47D	breast:	n/a	n/a
3	CTCF	chr15:41766956-41767129	K562	blood:	n/a	chr15:41767081-41767099 chr15:41767083-41767104
4	CTCF	chr15:41766880-41767030	MCF-7	breast:	n/a	n/a
5	CTCF	chr15:41766852-41767158	MCF-7	breast:	n/a	chr15:41767081-41767099 chr15:41767083-41767104

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41766904..41769343-chr15:41855092..41857004,2	MCF-7	breast:

Variant related genes	Relation type
RTF1	TF binding region
ENSG00000092445	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12908062	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4636885	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933757	chr15:41641236-41773058	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
2	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41722000-41768400	Weak transcription	Small Intestine	intestine
2	chr15:41724200-41777200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41729200-41773000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:41730000-41768400	Weak transcription	Psoas Muscle	Psoas
5	chr15:41730800-41769000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:41744000-41771800	Strong transcription	Fetal Intestine Small	intestine
7	chr15:41744200-41767400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:41745200-41775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:41750800-41767000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:41753000-41775000	Strong transcription	Fetal Stomach	stomach
11	chr15:41753800-41776800	Strong transcription	Fetal Muscle Leg	muscle
12	chr15:41754000-41774400	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:41754200-41775200	Strong transcription	Primary T cells from cord blood	blood
14	chr15:41754200-41776000	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:41754400-41774600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:41754400-41775000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr15:41754400-41776800	Strong transcription	Placenta	Placenta
18	chr15:41755000-41769400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:41755000-41775600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr15:41755400-41775200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:41756800-41769000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:41756800-41776200	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:41757000-41769000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:41757000-41774200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:41757000-41776200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:41757000-41776400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:41757200-41774400	Strong transcription	Fetal Brain Female	brain
28	chr15:41757200-41774600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:41757200-41775400	Strong transcription	Fetal Thymus	thymus
30	chr15:41757400-41774000	Strong transcription	Spleen	Spleen
31	chr15:41757400-41774200	Strong transcription	Thymus	Thymus
32	chr15:41757400-41776800	Strong transcription	Fetal Muscle Trunk	muscle
33	chr15:41758200-41768400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:41758400-41774000	Strong transcription	Lung	lung
35	chr15:41759000-41772400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:41759000-41774400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:41759000-41775000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:41759200-41771400	Weak transcription	Fetal Heart	heart
39	chr15:41759600-41767600	Weak transcription	Gastric	stomach
40	chr15:41760600-41768400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:41760600-41774000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:41760600-41774400	Strong transcription	Primary B cells from peripheral blood	blood
43	chr15:41760800-41773800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:41760800-41775600	Strong transcription	Placenta Amnion	Placenta Amnion
45	chr15:41761000-41776400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:41761200-41769200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:41761200-41771600	Strong transcription	Fetal Intestine Large	intestine
48	chr15:41761200-41774400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:41761800-41768800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:41761800-41772600	Strong transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links