Variant report

Variant	rs1677552
Chromosome Location	chr15:74044298-74044299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3421437	chr15:74043924-74046872	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv9813	chr15:74044169-74048692	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74043200-74044400	Bivalent Enhancer	Fetal Muscle Leg	muscle
2	chr15:74043200-74046000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr15:74043400-74044400	Bivalent Enhancer	Placenta	Placenta
4	chr15:74043400-74044800	Bivalent/Poised TSS	Fetal Lung	lung
5	chr15:74043400-74045000	Enhancers	Spleen	Spleen
6	chr15:74043400-74045400	Active TSS	Brain Substantia Nigra	brain
7	chr15:74043600-74044400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:74043600-74044400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr15:74043600-74044800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:74043600-74045000	Flanking Active TSS	Right Ventricle	heart
11	chr15:74043600-74045200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:74043600-74045400	Active TSS	Brain Cingulate Gyrus	brain
13	chr15:74043600-74045800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr15:74043600-74046000	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr15:74043800-74044400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:74043800-74044400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:74043800-74044400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:74043800-74044400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
19	chr15:74043800-74044400	Flanking Active TSS	Ovary	ovary
20	chr15:74043800-74044400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
21	chr15:74043800-74044600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:74043800-74044800	Enhancers	Fetal Heart	heart
23	chr15:74043800-74045000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:74043800-74045200	Active TSS	Fetal Kidney	kidney
25	chr15:74043800-74045400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
26	chr15:74043800-74045800	Active TSS	Right Atrium	heart
27	chr15:74043800-74046000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:74044000-74044400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:74044000-74044400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:74044000-74044400	Active TSS	Esophagus	oesophagus
31	chr15:74044000-74044400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr15:74044000-74044600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
33	chr15:74044000-74044600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:74044000-74044600	Active TSS	Brain Hippocampus Middle	brain
35	chr15:74044000-74044600	Enhancers	Pancreas	Pancrea
36	chr15:74044000-74044600	Active TSS	NH-A	brain
37	chr15:74044000-74045400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr15:74044000-74045400	Active TSS	Brain Angular Gyrus	brain
39	chr15:74044000-74045400	Active TSS	Brain Anterior Caudate	brain
40	chr15:74044000-74045800	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr15:74044000-74045800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:74044000-74045800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:74044000-74045800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
44	chr15:74044000-74046000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
45	chr15:74044000-74046000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
46	chr15:74044000-74046000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:74044000-74046000	Active TSS	Brain Germinal Matrix	brain
48	chr15:74044000-74046000	Active TSS	Fetal Brain Female	brain
49	chr15:74044200-74044400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:74044200-74044400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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