Variant report

Variant	rs167945
Chromosome Location	chr5:7973620-7973621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10055324	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1011918	0.81[AMR][1000 genomes]
rs10474822	0.81[AMR][1000 genomes]
rs10512939	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11739188	0.81[AMR][1000 genomes]
rs11739277	0.81[AMR][1000 genomes]
rs11739918	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11740325	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1466925	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16879633	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2128262	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2134586	0.81[AMR][1000 genomes]
rs2170499	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2170500	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2170501	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4479815	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56213621	0.81[EUR][1000 genomes]
rs6555508	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6866880	0.81[AMR][1000 genomes]
rs6868340	0.81[AMR][1000 genomes]
rs6868766	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6884685	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6889013	0.81[AMR][1000 genomes]
rs6893647	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6894466	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7448905	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs765611	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7706004	0.81[AMR][1000 genomes]
rs7719055	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7719216	0.81[AMR][1000 genomes]
rs7726545	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7728958	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7729849	0.81[AMR][1000 genomes]
rs7730786	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9313215	0.81[AMR][1000 genomes]
rs9313216	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv597005	chr5:7860404-8093077	Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv969262	chr5:7963307-7975337	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1027319	chr5:7963460-7989659	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7968200-7975400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links