Variant report

Variant	rs1681503
Chromosome Location	chr11:72462316-72462317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72461993..72465359-chr11:72491963..72493713,4	MCF-7	breast:
2	chr11:72460278..72463137-chr11:72532623..72535732,3	K562	blood:
3	chr11:72461276..72463225-chr11:72470233..72472021,2	MCF-7	breast:
4	chr11:72460278..72463137-chr11:72532761..72535732,2	K562	blood:
5	chr11:72459601..72462476-chr11:72491588..72494440,2	K562	blood:
6	chr11:72462084..72464225-chr11:72852648..72855227,2	K562	blood:
7	chr11:72460015..72463232-chr11:72523862..72525908,3	MCF-7	breast:
8	chr11:72461925..72464925-chr11:72465521..72468499,4	MCF-7	breast:
9	chr11:72459780..72464369-chr11:72496820..72501695,6	MCF-7	breast:
10	chr11:72460411..72465058-chr11:72522153..72526935,8	MCF-7	breast:
11	chr11:72461703..72464740-chr11:72523811..72527033,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168010	Chromatin interaction
ENSG00000137478	Chromatin interaction
ENSG00000214530	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10793040	0.88[ASN][1000 genomes]
rs2365439	0.84[ASN][1000 genomes]
rs624030	0.89[ASN][1000 genomes]
rs7110801	0.89[ASN][1000 genomes]
rs745995	0.86[ASN][1000 genomes]
rs900611	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72453600-72462400	Weak transcription	Left Ventricle	heart
2	chr11:72453800-72462400	Weak transcription	Esophagus	oesophagus
3	chr11:72454200-72462400	Weak transcription	Fetal Heart	heart
4	chr11:72456000-72462400	Weak transcription	Right Atrium	heart
5	chr11:72457400-72462400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:72459600-72462400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:72459600-72462400	Flanking Active TSS	HepG2	liver
8	chr11:72459600-72462800	Enhancers	Liver	Liver
9	chr11:72459800-72462600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:72460000-72462400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr11:72460600-72462400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr11:72461000-72462400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:72461000-72462400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:72461000-72462400	Enhancers	Spleen	Spleen
15	chr11:72461000-72462600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:72461000-72462800	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr11:72461000-72462800	Enhancers	Pancreas	Pancrea
18	chr11:72461200-72462400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:72461200-72462400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:72461200-72462600	Enhancers	Fetal Muscle Trunk	muscle
21	chr11:72461200-72462600	Enhancers	Placenta	Placenta
22	chr11:72461400-72462400	Enhancers	Fetal Lung	lung
23	chr11:72461400-72463200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr11:72461400-72463200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:72461600-72462400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:72461600-72462400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:72461600-72462400	Enhancers	Brain Germinal Matrix	brain
28	chr11:72461600-72462400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr11:72461600-72462400	Enhancers	Thymus	Thymus
30	chr11:72461600-72462600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:72461600-72462600	Flanking Active TSS	Brain Substantia Nigra	brain
32	chr11:72461600-72462600	Enhancers	Fetal Muscle Leg	muscle
33	chr11:72461600-72462600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr11:72461600-72462800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:72461600-72462800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:72461600-72462800	Flanking Active TSS	GM12878-XiMat	blood
37	chr11:72461600-72462800	Flanking Active TSS	Hela-S3	cervix
38	chr11:72461600-72463000	Flanking Active TSS	Dnd41	blood
39	chr11:72461600-72463400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:72461600-72464400	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr11:72461600-72464400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr11:72461800-72462400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:72461800-72462400	Enhancers	Fetal Thymus	thymus
44	chr11:72461800-72462400	Active TSS	Stomach Smooth Muscle	stomach
45	chr11:72461800-72462400	Enhancers	NH-A	brain
46	chr11:72461800-72462600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:72461800-72462600	Flanking Active TSS	Brain Cingulate Gyrus	brain
48	chr11:72461800-72462600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:72461800-72462600	Enhancers	Fetal Stomach	stomach
50	chr11:72461800-72462600	Enhancers	Skeletal Muscle Female	skeletal muscle

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