Variant report

Variant	rs168177
Chromosome Location	chr11:72258189-72258190
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11820922	1.00[AMR][1000 genomes]
rs11821141	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822802	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823939	1.00[AMR][1000 genomes]
rs341073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs341074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111810	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
2	nsv897910	chr11:72154529-72281884	Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72257000-72259000	Enhancers	Fetal Muscle Trunk	muscle
2	chr11:72257400-72260600	Enhancers	Fetal Muscle Leg	muscle
3	chr11:72257600-72260800	Enhancers	Hela-S3	cervix
4	chr11:72257800-72258400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:72258000-72258200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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