Variant report
| Variant | rs168211 |
|---|---|
| Chromosome Location | chr5:16185654-16185655 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:16184562..16186282-chr5:16187209..16189140,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FBXL7-2 | chr5:16183832-16185694 | ENSG00000250448 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10056479 | 0.81[ASN][1000 genomes] |
| rs10075110 | 0.82[ASN][1000 genomes] |
| rs10079067 | 0.82[ASN][1000 genomes] |
| rs2402235 | 0.82[ASN][1000 genomes] |
| rs4565210 | 0.82[ASN][1000 genomes] |
| rs4701652 | 0.82[ASN][1000 genomes] |
| rs4701653 | 0.82[ASN][1000 genomes] |
| rs4702129 | 0.82[ASN][1000 genomes] |
| rs4702130 | 0.82[ASN][1000 genomes] |
| rs6866941 | 0.82[ASN][1000 genomes] |
| rs995764 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830217 | chr5:16004704-16225229 | Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
