Variant report

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:182602919..182608806-chr2:182883835..182887841,7	MCF-7	breast:
2	chr2:182815537..182821500-chr2:182882210..182887020,9	MCF-7	breast:
3	chr2:182885314..182886019-chr2:182941870..182942703,2	MCF-7	breast:
4	chr2:182882960..182887260-chr2:182931387..182935614,8	MCF-7	breast:
5	chr2:182775265..182779288-chr2:182885219..182887763,3	MCF-7	breast:
6	chr2:182884072..182887118-chr2:182924056..182928704,4	MCF-7	breast:
7	chr2:182880540..182889219-chr2:182930483..182937514,17	MCF-7	breast:
8	chr2:182878350..182883617-chr2:182884641..182888824,4	MCF-7	breast:
9	chr2:182767335..182770167-chr2:182885743..182887524,2	MCF-7	breast:
10	chr2:182755546..182763410-chr2:182881457..182887322,14	MCF-7	breast:
11	chr2:182754599..182765670-chr2:182881701..182887661,28	MCF-7	breast:
12	chr2:182884188..182888119-chr2:182990048..182995139,6	MCF-7	breast:
13	chr2:182879005..182882272-chr2:182882883..182886992,5	MCF-7	breast:
14	chr2:182880362..182889935-chr2:182937119..182944893,30	MCF-7	breast:
15	chr2:182885316..182887646-chr2:182929633..182931322,2	MCF-7	breast:
16	chr2:182767750..182771715-chr2:182883912..182886743,3	MCF-7	breast:
17	chr2:182798416..182800516-chr2:182884535..182886696,2	MCF-7	breast:
18	chr2:182885247..182888264-chr2:182945298..182948359,3	MCF-7	breast:
19	chr2:182880158..182888359-chr2:182937576..182947086,29	MCF-7	breast:
20	chr2:182792850..182795214-chr2:182884772..182886542,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:8)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv834479	chr2:182738483-182905444	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182843400-182904000	Weak transcription	Thymus	Thymus
2	chr2:182883000-182886000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:182883000-182886800	Enhancers	Hela-S3	cervix
4	chr2:182884000-182886000	Enhancers	Fetal Lung	lung
5	chr2:182884400-182886800	Enhancers	Dnd41	blood
6	chr2:182884600-182886000	Enhancers	NH-A	brain
7	chr2:182884800-182886000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:182884800-182888400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:182885000-182886000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:182885000-182886000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:182885000-182886000	Enhancers	Osteobl	bone
12	chr2:182885000-182886200	Enhancers	Fetal Thymus	thymus
13	chr2:182885200-182886000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr2:182885200-182886000	Enhancers	HepG2	liver
15	chr2:182885200-182886000	Enhancers	HMEC	breast
16	chr2:182885400-182886000	Enhancers	Stomach Mucosa	stomach
17	chr2:182885600-182886000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:182885600-182886000	Enhancers	NHLF	lung

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