Variant report

Variant	rs16822654
Chromosome Location	chr2:182991817-182991818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182608371..182610484-chr2:182990865..182992753,2	MCF-7	breast:
2	chr2:182940136..182945901-chr2:182990915..182998605,17	MCF-7	breast:
3	chr2:182780940..182782752-chr2:182991340..182994211,2	MCF-7	breast:
4	chr2:182756103..182758959-chr2:182990801..182994027,3	MCF-7	breast:
5	chr2:182754959..182757996-chr2:182990661..182994349,5	MCF-7	breast:
6	chr2:182948523..182950628-chr2:182991331..182993046,3	MCF-7	breast:
7	chr2:182884188..182888119-chr2:182990048..182995139,6	MCF-7	breast:
8	chr2:182816967..182818729-chr2:182991457..182992966,2	MCF-7	breast:
9	chr2:182817707..182819677-chr2:182989420..182992160,2	MCF-7	breast:
10	chr2:182941653..182947128-chr2:182990854..182994247,10	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSFA2-1	chr2:182991664-182993417	NONHSAT075904

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16822577	0.81[ASN][1000 genomes]
rs16822590	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16822598	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2568683	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182966800-182996400	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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