Variant report

Variant	rs16823124
Chromosome Location	chr2:183224127-183224128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:183220786..183225092-chr2:183225248..183228403,3	MCF-7	breast:
2	chr2:183223904..183227236-chr2:183228797..183232195,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10497597	0.85[CEU][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs10931008	0.90[CEU][hapmap]
rs10931009	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11675803	0.94[EUR][1000 genomes]
rs11676337	0.80[CHD][hapmap];0.83[JPT][hapmap]
rs11679657	0.82[JPT][hapmap]
rs11682598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12475637	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12996836	0.80[CEU][hapmap];0.83[TSI][hapmap]
rs1430158	0.85[CEU][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs1438065	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1560370	0.81[CHD][hapmap]
rs16823150	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2623431	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs4335909	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4630732	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56730309	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59883476	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6730984	0.89[EUR][1000 genomes]
rs7558737	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs833166	0.83[EUR][1000 genomes]
rs833168	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs864417	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834481	chr2:183189758-183339577	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183213600-183224400	Weak transcription	Aorta	Aorta
2	chr2:183217400-183224200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr2:183223200-183224200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:183223200-183224200	Enhancers	Colon Smooth Muscle	Colon
5	chr2:183223600-183224400	Enhancers	Stomach Smooth Muscle	stomach
6	chr2:183223600-183224600	Enhancers	Fetal Stomach	stomach
7	chr2:183223600-183224600	Enhancers	Rectal Smooth Muscle	rectum
8	chr2:183223600-183228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:183223800-183224200	Enhancers	A549	lung
10	chr2:183223800-183224400	Enhancers	Fetal Kidney	kidney
11	chr2:183224000-183225600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links