Variant report

Variant	rs16823266
Chromosome Location	chr1:184456697-184456698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:184455444..184457355-chr1:184458781..184460828,3	MCF-7	breast:
2	chr1:184448548..184450086-chr1:184454598..184457186,2	K562	blood:
3	chr1:184456316..184459297-chr1:184462033..184464590,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10489727	1.00[AMR][1000 genomes]
rs1977144	1.00[AMR][1000 genomes]
rs58369306	1.00[AMR][1000 genomes]
rs61004935	1.00[AMR][1000 genomes]
rs73046716	1.00[AMR][1000 genomes]
rs73061657	1.00[AMR][1000 genomes]
rs73063518	1.00[AMR][1000 genomes]
rs73063548	1.00[AMR][1000 genomes]
rs73063553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv2756618	chr1:184393343-184674343	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184444600-184460400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:184447400-184457600	Enhancers	Fetal Intestine Small	intestine
3	chr1:184447800-184457000	Enhancers	Fetal Intestine Large	intestine
4	chr1:184449200-184460600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr1:184449800-184457000	Enhancers	Colon Smooth Muscle	Colon
6	chr1:184449800-184457200	Enhancers	Adipose Nuclei	Adipose
7	chr1:184449800-184457200	Enhancers	Fetal Muscle Leg	muscle
8	chr1:184449800-184457400	Enhancers	Ovary	ovary
9	chr1:184449800-184457600	Enhancers	Right Atrium	heart
10	chr1:184449800-184459800	Enhancers	Psoas Muscle	Psoas
11	chr1:184450200-184463200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:184450400-184457600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:184450800-184457000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr1:184451400-184457000	Enhancers	Stomach Mucosa	stomach
15	chr1:184451400-184463600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:184451600-184459200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:184451800-184457200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr1:184452000-184457200	Enhancers	Duodenum Mucosa	Duodenum
19	chr1:184452200-184457600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:184452400-184457400	Enhancers	NHLF	lung
21	chr1:184452600-184457200	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:184452600-184458800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:184452600-184459600	Weak transcription	NH-A	brain
24	chr1:184452800-184457200	Enhancers	Small Intestine	intestine
25	chr1:184452800-184457200	Enhancers	Stomach Smooth Muscle	stomach
26	chr1:184452800-184459200	Weak transcription	Brain Anterior Caudate	brain
27	chr1:184454000-184461400	Weak transcription	Gastric	stomach
28	chr1:184454200-184461800	Weak transcription	Fetal Brain Male	brain
29	chr1:184454400-184459200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:184454400-184459400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:184454600-184457000	Enhancers	H1 Cell Line	embryonic stem cell
32	chr1:184454600-184457200	Enhancers	Right Ventricle	heart
33	chr1:184454800-184456800	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr1:184454800-184456800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr1:184454800-184457200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr1:184454800-184457600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr1:184454800-184459600	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr1:184455000-184457200	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr1:184455200-184457600	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr1:184455200-184482000	Weak transcription	Esophagus	oesophagus
41	chr1:184455400-184456800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:184455400-184457400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr1:184455400-184457600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr1:184455400-184458400	Weak transcription	HSMM	muscle
45	chr1:184455400-184460400	Weak transcription	Placenta	Placenta
46	chr1:184455600-184456800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:184455600-184459200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:184455600-184459200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:184455600-184459200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr1:184455600-184459200	Weak transcription	A549	lung

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