Variant report

Variant	rs16824182
Chromosome Location	chr1:185458731-185458732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16824166	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185453400-185460200	Weak transcription	Gastric	stomach
2	chr1:185453600-185461400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:185455000-185461400	Enhancers	Fetal Intestine Small	intestine
4	chr1:185455000-185462800	Enhancers	Fetal Intestine Large	intestine
5	chr1:185455600-185460400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:185456000-185458800	Enhancers	Fetal Heart	heart
7	chr1:185456200-185458800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:185456200-185458800	Enhancers	Ovary	ovary
9	chr1:185457400-185458800	Enhancers	Duodenum Mucosa	Duodenum
10	chr1:185457600-185459000	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr1:185457800-185458800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:185457800-185459600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:185458000-185458800	Enhancers	Small Intestine	intestine
14	chr1:185458000-185458800	Enhancers	NHEK	skin
15	chr1:185458000-185461400	Weak transcription	Fetal Brain Male	brain
16	chr1:185458000-185462600	Weak transcription	Fetal Brain Female	brain
17	chr1:185458200-185459200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:185458600-185459800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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