Variant report

Variant	rs16824922
Chromosome Location	chr2:210545867-210545868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:210545722-210546194	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr2:210545581-210546637	PFSK-1	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210538640..210540966-chr2:210544100..210546598,2	K562	blood:

Variant related genes	Relation type
MAP2	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11884652	0.83[AFR][1000 genomes]
rs11887037	0.89[AFR][1000 genomes]
rs13425372	0.90[AFR][1000 genomes]
rs16843456	0.90[AFR][1000 genomes]
rs16843532	0.84[AFR][1000 genomes]
rs35242434	0.89[AFR][1000 genomes]
rs6749066	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210528600-210550200	Weak transcription	Brain Substantia Nigra	brain
2	chr2:210528800-210550200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:210531400-210587800	Weak transcription	Brain Angular Gyrus	brain
4	chr2:210536600-210552200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:210537000-210550400	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:210537000-210596800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:210537600-210547000	Weak transcription	Brain Germinal Matrix	brain
8	chr2:210537600-210550200	Weak transcription	Fetal Brain Male	brain
9	chr2:210540200-210552200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:210541600-210550600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:210541800-210551600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:210541800-210596400	Weak transcription	Gastric	stomach
13	chr2:210542000-210555400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:210542400-210546000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:210543200-210549000	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:210543600-210552200	Weak transcription	Pancreas	Pancrea
17	chr2:210543800-210548000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:210543800-210550200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr2:210544000-210547400	Weak transcription	Aorta	Aorta
20	chr2:210544000-210550200	Weak transcription	Brain Anterior Caudate	brain
21	chr2:210544000-210596600	Weak transcription	Ovary	ovary
22	chr2:210544200-210555200	Weak transcription	Left Ventricle	heart
23	chr2:210544400-210598600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:210544800-210546800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:210545000-210546000	Strong transcription	Fetal Brain Female	brain
26	chr2:210545200-210546400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:210545400-210546400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr2:210545800-210546200	Enhancers	NHEK	skin
29	chr2:210545800-210546400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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