Variant report

Variant	rs16825505
Chromosome Location	chr2:134234914-134234915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:134230001..134232514-chr2:134234321..134235874,2	MCF-7	breast:
2	chr2:134234673..134237386-chr2:134238452..134240257,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10165238	0.82[CEU][hapmap]
rs1017366	1.00[CEU][hapmap]
rs10201373	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10206425	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11891880	1.00[CEU][hapmap]
rs13399787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408209	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs16825509	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826052	1.00[CEU][hapmap]
rs17747958	0.83[EUR][1000 genomes]
rs17815418	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs59937852	0.83[EUR][1000 genomes]
rs61599793	0.81[EUR][1000 genomes]
rs6720995	1.00[CEU][hapmap]
rs6730679	1.00[CEU][hapmap]
rs6742928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7340446	0.82[CEU][hapmap]
rs7340510	1.00[CEU][hapmap]
rs7585350	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9917399	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997821	chr2:133868822-134360220	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535927	chr2:133868822-134360220	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1002488	chr2:133890159-134275312	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv535928	chr2:133890159-134275312	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134231400-134240000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:134232600-134236200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:134232600-134236200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:134232600-134236200	Enhancers	HMEC	breast
5	chr2:134232600-134236400	Enhancers	NHEK	skin
6	chr2:134232600-134236600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:134233400-134235200	Enhancers	Fetal Intestine Large	intestine
8	chr2:134234400-134235000	Enhancers	Fetal Intestine Small	intestine
9	chr2:134234600-134235200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr2:134234600-134235400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr2:134234800-134235000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:134234800-134235000	Enhancers	Left Ventricle	heart
13	chr2:134234800-134235200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:134234800-134235200	Enhancers	Fetal Stomach	stomach
15	chr2:134234800-134235200	Enhancers	NHDF-Ad	bronchial
16	chr2:134234800-134235600	Enhancers	Ovary	ovary

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