Variant report

Variant	rs16825521
Chromosome Location	chr1:186508371-186508372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:186501486..186504451-chr1:186506329..186509291,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11800288	0.86[AFR][1000 genomes]
rs11800338	0.82[AFR][1000 genomes]
rs11804785	0.86[AFR][1000 genomes]
rs11806329	0.81[AFR][1000 genomes]
rs11806663	0.81[AFR][1000 genomes]
rs11807443	0.81[AFR][1000 genomes]
rs11807927	0.86[AFR][1000 genomes]
rs11811259	0.86[AFR][1000 genomes]
rs11811260	0.86[AFR][1000 genomes]
rs12723621	0.86[AFR][1000 genomes]
rs12731687	0.81[AFR][1000 genomes]
rs12739006	0.86[AFR][1000 genomes]
rs12739643	0.81[AFR][1000 genomes]
rs12753223	0.81[AFR][1000 genomes]
rs2223784	0.86[AFR][1000 genomes]
rs2383384	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34272627	0.86[AFR][1000 genomes]
rs34310508	0.86[AFR][1000 genomes]
rs34778311	0.89[AFR][1000 genomes]
rs34783173	0.81[AFR][1000 genomes]
rs35240980	0.81[AFR][1000 genomes]
rs36030781	0.81[AFR][1000 genomes]
rs4140432	0.86[AFR][1000 genomes]
rs58724193	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6674145	0.86[AFR][1000 genomes]
rs6678198	0.86[AFR][1000 genomes]
rs6678793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6680055	0.86[AFR][1000 genomes]
rs6683271	0.81[AFR][1000 genomes]
rs6694420	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701967	0.91[AFR][1000 genomes]
rs6704256	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71634173	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1012164	chr1:186323867-186565995	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv2762201	chr1:186323879-186566007	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv832059	chr1:186464932-186639125	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186504800-186510200	Weak transcription	Right Atrium	heart
2	chr1:186506400-186509600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:186506400-186512200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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