Variant report

Variant	rs16827899
Chromosome Location	chr2:151018937-151018938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs72989957	1.00[AMR][1000 genomes]
rs72989985	1.00[AMR][1000 genomes]
rs72993813	1.00[AMR][1000 genomes]
rs72993820	1.00[AMR][1000 genomes]
rs72993826	1.00[AMR][1000 genomes]
rs73002478	1.00[AMR][1000 genomes]
rs73004252	1.00[AMR][1000 genomes]
rs73004256	1.00[AMR][1000 genomes]
rs73004259	1.00[AMR][1000 genomes]
rs73004264	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005441	chr2:150457624-151060247	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv469524	chr2:150927500-151076920	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv834412	chr2:151014270-151116638	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151011000-151019000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:151013400-151023800	Weak transcription	Fetal Brain Male	brain
3	chr2:151013800-151022800	Weak transcription	Fetal Lung	lung
4	chr2:151014600-151021400	Weak transcription	A549	lung
5	chr2:151017200-151024000	Weak transcription	NHDF-Ad	bronchial
6	chr2:151017800-151019200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:151018200-151019000	Enhancers	HUVEC	blood vessel
8	chr2:151018400-151020400	Enhancers	Brain Germinal Matrix	brain
9	chr2:151018600-151022800	Weak transcription	Aorta	Aorta
10	chr2:151018800-151019200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:151018800-151020400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:151018800-151020400	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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