Variant report

Variant	rs16827930
Chromosome Location	chr1:166354259-166354260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16827931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16857036	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16857044	0.83[AMR][1000 genomes]
rs4422983	0.83[AMR][1000 genomes]
rs56945226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74119728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74119732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74119733	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166352000-166360200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:166352200-166356000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr1:166352600-166354600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:166352800-166356200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:166353000-166354400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr1:166353000-166356200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:166353200-166354600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr1:166353400-166354800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr1:166354000-166355200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:166354000-166355200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr1:166354000-166355600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:166354200-166354400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:166354200-166354600	Enhancers	Right Atrium	heart
14	chr1:166354200-166354800	Enhancers	Adipose Nuclei	Adipose
15	chr1:166354200-166354800	Enhancers	Left Ventricle	heart
16	chr1:166354200-166354800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr1:166354200-166355400	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links