Variant report

Variant	rs16828340
Chromosome Location	chr2:151442863-151442864
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151431784..151434680-chr2:151442066..151443954,2	K562	blood:
2	chr2:151340454..151344785-chr2:151441787..151446724,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115963	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16828339	0.83[AMR][1000 genomes]
rs16828344	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs16828351	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs16828355	0.83[AMR][1000 genomes]
rs16828361	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs16828378	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv834415	chr2:151374254-151558649	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151427400-151444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:151430800-151443400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:151440800-151445400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:151441200-151443800	Enhancers	NHDF-Ad	bronchial
5	chr2:151441400-151445800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:151441600-151443800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:151441600-151444000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:151441600-151445000	Enhancers	Osteobl	bone
9	chr2:151441800-151445400	Enhancers	NHLF	lung
10	chr2:151442000-151443800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:151442000-151445200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:151442200-151444600	Enhancers	NH-A	brain
13	chr2:151442400-151444600	Enhancers	HMEC	breast
14	chr2:151442400-151445200	Enhancers	HSMM	muscle
15	chr2:151442400-151445200	Enhancers	HSMMtube	muscle
16	chr2:151442600-151443000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr2:151442600-151443400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:151442600-151444400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:151442600-151445400	Enhancers	A549	lung
20	chr2:151442600-151446600	Enhancers	Fetal Brain Male	brain
21	chr2:151442800-151443200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:151442800-151443200	Weak transcription	NHEK	skin
23	chr2:151442800-151444400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:151442800-151444600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:151442800-151445200	Enhancers	Fetal Brain Female	brain

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