Variant report

Variant	rs16828766
Chromosome Location	chr2:134509883-134509884
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11901215	1.00[MEX][hapmap]
rs56170261	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61290996	0.88[AFR][1000 genomes]
rs61465743	0.87[AMR][1000 genomes]
rs6430445	0.88[AFR][1000 genomes]
rs6726548	0.91[AFR][1000 genomes]
rs6753469	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73003855	0.88[AFR][1000 genomes]
rs73003879	0.91[AFR][1000 genomes]
rs73003897	0.92[AFR][1000 genomes]
rs73003900	0.92[AFR][1000 genomes]
rs73005709	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73005714	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73005722	0.85[AFR][1000 genomes]
rs73005734	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73957243	0.94[AFR][1000 genomes]
rs73960110	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7584447	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv963883	chr2:134508919-134516201	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134505800-134511400	Weak transcription	Left Ventricle	heart
2	chr2:134506000-134512800	Weak transcription	NHLF	lung
3	chr2:134507200-134510600	Weak transcription	Fetal Heart	heart
4	chr2:134508800-134512600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:134508800-134513200	Weak transcription	Fetal Brain Female	brain
6	chr2:134509200-134512800	Weak transcription	Fetal Brain Male	brain
7	chr2:134509600-134510000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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