Variant report

Variant	rs16829057
Chromosome Location	chr2:149372769-149372770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:149371306..149373545-chr2:149401234..149403326,2	MCF-7	breast:
2	chr2:149372080..149375657-chr2:149400986..149403632,3	K562	blood:
3	chr2:149366286..149369702-chr2:149370979..149374487,6	K562	blood:
4	chr2:149364050..149366946-chr2:149371710..149373906,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135999	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1031290	0.91[JPT][hapmap]
rs13008779	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16829022	0.83[MKK][hapmap]
rs59898377	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6725114	0.86[MKK][hapmap]
rs6740827	0.86[MKK][hapmap]
rs6746352	0.86[JPT][hapmap]
rs6761549	0.86[JPT][hapmap]
rs720844	0.86[JPT][hapmap]
rs935384	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751831	chr2:149151358-150105603	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv868861	chr2:149198443-149434604	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv917109	chr2:149198443-149948302	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1004663	chr2:149214090-149373061	Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1827161	chr2:149352353-149475737	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:149371000-149372800	Enhancers	Hela-S3	cervix
2	chr2:149371000-149373600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:149371000-149373600	Enhancers	Placenta	Placenta
4	chr2:149371000-149373800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:149371000-149374000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:149371000-149374600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:149371000-149374800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:149371200-149373600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr2:149371200-149373600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:149371200-149373600	Enhancers	Fetal Muscle Leg	muscle
11	chr2:149371200-149374800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:149371200-149374800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:149371200-149374800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:149371400-149373000	Enhancers	Brain Anterior Caudate	brain
15	chr2:149371400-149373000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr2:149371400-149373200	Enhancers	NH-A	brain
17	chr2:149371400-149373400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:149371400-149373400	Enhancers	Primary B cells from peripheral blood	blood
19	chr2:149371400-149373400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:149371400-149373400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr2:149371400-149373600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr2:149371400-149373600	Enhancers	Colon Smooth Muscle	Colon
23	chr2:149371400-149373600	Enhancers	Fetal Lung	lung
24	chr2:149371400-149373600	Enhancers	HMEC	breast
25	chr2:149371400-149373800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr2:149371400-149373800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr2:149371400-149373800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr2:149371400-149373800	Enhancers	Brain Cingulate Gyrus	brain
29	chr2:149371400-149374000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:149371400-149374000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr2:149371400-149374600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr2:149371600-149372800	Enhancers	Primary B cells from cord blood	blood
33	chr2:149371600-149372800	Enhancers	Liver	Liver
34	chr2:149371600-149372800	Enhancers	Fetal Kidney	kidney
35	chr2:149371600-149372800	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr2:149371600-149372800	Enhancers	HUVEC	blood vessel
37	chr2:149371600-149372800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr2:149371600-149373000	Enhancers	Brain Angular Gyrus	brain
39	chr2:149371600-149373200	Enhancers	Psoas Muscle	Psoas
40	chr2:149371600-149373400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr2:149371600-149373400	Enhancers	Ovary	ovary
42	chr2:149371600-149373400	Enhancers	Rectal Smooth Muscle	rectum
43	chr2:149371600-149373400	Enhancers	HSMM	muscle
44	chr2:149371600-149373600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr2:149371600-149373600	Enhancers	Primary hematopoietic stem cells	blood
46	chr2:149371600-149373600	Enhancers	Adipose Nuclei	Adipose
47	chr2:149371600-149373600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr2:149371600-149373600	Enhancers	Right Atrium	heart
49	chr2:149371600-149373600	Enhancers	Right Ventricle	heart
50	chr2:149371600-149373600	Enhancers	Skeletal Muscle Female	skeletal muscle

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