Variant report

Variant	rs16829306
Chromosome Location	chr2:151888889-151888890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12464141	0.87[EUR][1000 genomes]
rs12466694	0.87[EUR][1000 genomes]
rs12468125	0.87[EUR][1000 genomes]
rs12468172	0.87[EUR][1000 genomes]
rs12472474	0.87[EUR][1000 genomes]
rs12473256	0.87[EUR][1000 genomes]
rs12473325	0.87[EUR][1000 genomes]
rs12614295	0.87[EUR][1000 genomes]
rs12614304	0.87[EUR][1000 genomes]
rs12617868	0.87[EUR][1000 genomes]
rs12618502	0.87[EUR][1000 genomes]
rs12620637	0.87[EUR][1000 genomes]
rs12988725	0.85[EUR][1000 genomes]
rs1601361	0.87[EUR][1000 genomes]
rs1601362	0.87[EUR][1000 genomes]
rs1601363	0.87[EUR][1000 genomes]
rs1905746	0.83[EUR][1000 genomes]
rs1905747	0.82[EUR][1000 genomes]
rs1905748	0.84[EUR][1000 genomes]
rs1905749	0.85[EUR][1000 genomes]
rs56985368	0.84[EUR][1000 genomes]
rs57031532	0.87[EUR][1000 genomes]
rs57189116	0.87[EUR][1000 genomes]
rs59769602	0.84[EUR][1000 genomes]
rs61658188	0.87[EUR][1000 genomes]
rs62168584	0.84[EUR][1000 genomes]
rs62168585	0.87[EUR][1000 genomes]
rs62168586	0.87[EUR][1000 genomes]
rs62168587	0.87[EUR][1000 genomes]
rs62168588	0.87[EUR][1000 genomes]
rs62168589	0.87[EUR][1000 genomes]
rs62168590	0.87[EUR][1000 genomes]
rs62168592	0.87[EUR][1000 genomes]
rs62168595	0.86[EUR][1000 genomes]
rs62168621	0.87[EUR][1000 genomes]
rs62168622	0.86[EUR][1000 genomes]
rs62168624	0.87[EUR][1000 genomes]
rs62168626	0.85[EUR][1000 genomes]
rs62168627	0.87[EUR][1000 genomes]
rs62168628	0.87[EUR][1000 genomes]
rs62168629	0.87[EUR][1000 genomes]
rs62168630	0.84[EUR][1000 genomes]
rs6742534	0.86[EUR][1000 genomes]
rs7574935	0.87[EUR][1000 genomes]
rs7584238	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151884000-151889400	Weak transcription	Fetal Heart	heart
2	chr2:151886400-151889000	Weak transcription	Fetal Lung	lung
3	chr2:151886800-151889200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:151887400-151889200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:151887600-151890400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:151888400-151890800	Enhancers	NHDF-Ad	bronchial
7	chr2:151888400-151891200	Enhancers	Fetal Stomach	stomach
8	chr2:151888600-151889400	Enhancers	Fetal Brain Male	brain
9	chr2:151888600-151890400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:151888600-151890800	Enhancers	Fetal Brain Female	brain
11	chr2:151888600-151890800	Enhancers	NHLF	lung
12	chr2:151888800-151889400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:151888800-151890000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:151888800-151890200	Enhancers	Fetal Muscle Leg	muscle
15	chr2:151888800-151890400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:151888800-151890400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:151888800-151890600	Enhancers	Osteobl	bone
18	chr2:151888800-151891000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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