Variant report
| Variant | rs16830135 |
|---|---|
| Chromosome Location | chr3:159021427-159021428 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11917829 | 0.89[CHB][hapmap];0.90[JPT][hapmap] |
| rs13059800 | 0.81[CHB][hapmap] |
| rs13091349 | 0.81[CHB][hapmap] |
| rs16830184 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap] |
| rs16830232 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs16830267 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs16830290 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs16830298 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap] |
| rs16830299 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap] |
| rs16830314 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap] |
| rs16830326 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs16830331 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap] |
| rs16830334 | 0.89[CHB][hapmap];0.90[JPT][hapmap] |
| rs1844468 | 0.89[CHB][hapmap] |
| rs1973660 | 1.00[CEU][hapmap];0.89[CHB][hapmap] |
| rs2029100 | 1.00[CEU][hapmap];0.89[CHB][hapmap] |
| rs2029101 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap] |
| rs2102724 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap] |
| rs3912726 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap] |
| rs6781001 | 0.81[CHB][hapmap] |
| rs6796565 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap] |
| rs7620403 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap] |
| rs7629397 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap] |
| rs7631740 | 0.89[CHB][hapmap];0.89[JPT][hapmap] |
| rs7639707 | 0.89[CHB][hapmap];0.81[JPT][hapmap] |
| rs7642306 | 1.00[CEU][hapmap];0.86[CHB][hapmap] |
| rs9871361 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530059 | chr3:158332590-159147549 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv470971 | chr3:158590928-159158217 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1012602 | chr3:158800182-159031618 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:159017400-159021800 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr3:159021200-159022400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
