Variant report

Variant	rs16830412
Chromosome Location	chr2:152690604-152690605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152684180..152686852-chr2:152690162..152693530,4	MCF-7	breast:
2	chr2:152689042..152691234-chr2:152692225..152695696,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARL5A-2	chr2:152690495-152691098	NONHSAT074969

Variant related genes	Relation type
ENSG00000162980	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4378803	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv3693431	chr2:152683731-152981827	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152685400-152697200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:152685600-152694600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:152685600-152695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:152685600-152697600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:152685600-152699400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:152685600-152709600	Weak transcription	Fetal Brain Female	brain
7	chr2:152685800-152692000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:152685800-152695200	Weak transcription	Brain Anterior Caudate	brain
9	chr2:152685800-152695600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:152685800-152697400	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:152685800-152699200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:152685800-152699400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr2:152685800-152702200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:152687600-152696600	Weak transcription	Fetal Intestine Small	intestine
15	chr2:152688000-152697600	Weak transcription	HepG2	liver
16	chr2:152688200-152691400	Weak transcription	Fetal Intestine Large	intestine
17	chr2:152689800-152692200	Enhancers	GM12878-XiMat	blood
18	chr2:152690000-152692400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr2:152690400-152690800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr2:152690400-152690800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr2:152690400-152691000	Enhancers	Primary B cells from cord blood	blood
22	chr2:152690400-152691000	Enhancers	Primary hematopoietic stem cells	blood
23	chr2:152690400-152691000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:152690400-152691400	Enhancers	Monocytes-CD14+_RO01746	blood

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