Variant report

Variant	rs16830449
Chromosome Location	chr3:119488054-119488055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56210597	0.85[AFR][1000 genomes]
rs72965049	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119474400-119493400	Weak transcription	Ovary	ovary
2	chr3:119487600-119488200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:119487600-119488400	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr3:119487800-119489000	Enhancers	Stomach Mucosa	stomach
5	chr3:119487800-119489200	Enhancers	Osteobl	bone
6	chr3:119488000-119488600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:119488000-119488600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr3:119488000-119488600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr3:119488000-119488600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr3:119488000-119488600	Flanking Active TSS	HUVEC	blood vessel
11	chr3:119488000-119488800	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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