Variant report

Variant	rs1683105
Chromosome Location	chr14:97427957-97427958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1280080	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17094781	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs710265	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7145909	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7146369	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs856257	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs856259	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs856264	0.82[AFR][1000 genomes]
rs856269	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs856277	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs856278	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs861322	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs863084	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv902212	chr14:97413032-97474908	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1048462	chr14:97421360-97804598	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv988078	chr14:97421582-97430696	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97408600-97428600	Weak transcription	Thymus	Thymus
2	chr14:97420200-97430800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:97425600-97428600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr14:97426000-97428200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr14:97426200-97431400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr14:97426400-97428600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:97426400-97430200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr14:97426400-97431200	Enhancers	Primary B cells from peripheral blood	blood
9	chr14:97426600-97428800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr14:97427000-97428200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
11	chr14:97427000-97428400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:97427000-97428600	Enhancers	Primary B cells from cord blood	blood
13	chr14:97427000-97428600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr14:97427200-97432200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:97427400-97428200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr14:97427600-97428200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr14:97427600-97431800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:97427800-97428200	Weak transcription	Dnd41	blood
19	chr14:97427800-97428400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr14:97427800-97428400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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