Variant report

Variant	rs16831144
Chromosome Location	chr2:153311636-153311637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153309932..153311726-chr2:153315428..153318053,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16831137	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875291	chr2:153251742-153339823	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1013777	chr2:153273637-153538546	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv2754362	chr2:153297577-153366129	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv875292	chr2:153308471-153357383	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153301000-153314200	Weak transcription	Placenta	Placenta
2	chr2:153301800-153321000	Weak transcription	Right Atrium	heart
3	chr2:153302400-153312400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:153302400-153321600	Weak transcription	Left Ventricle	heart
5	chr2:153302800-153314800	Weak transcription	Aorta	Aorta
6	chr2:153303000-153312600	Weak transcription	Hela-S3	cervix
7	chr2:153303400-153322600	Weak transcription	NHLF	lung
8	chr2:153303600-153312000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:153304400-153312400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:153304400-153321800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:153304600-153312000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:153305200-153312000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:153305200-153312200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:153305200-153312400	Weak transcription	HMEC	breast
15	chr2:153305600-153321800	Weak transcription	Fetal Intestine Small	intestine
16	chr2:153306200-153319800	Weak transcription	Psoas Muscle	Psoas
17	chr2:153306200-153320200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr2:153307600-153313200	Enhancers	HepG2	liver
19	chr2:153308600-153311800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:153308800-153312400	Weak transcription	NHEK	skin
21	chr2:153309400-153311800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr2:153309400-153312600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr2:153309400-153321600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr2:153309400-153323600	Enhancers	Brain Angular Gyrus	brain
25	chr2:153309600-153312600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr2:153309600-153312600	Weak transcription	A549	lung
27	chr2:153309600-153313200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr2:153309800-153312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr2:153310000-153312000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr2:153310000-153312400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr2:153310200-153312000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr2:153310400-153312000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:153310400-153312000	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr2:153310400-153312000	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr2:153310400-153312200	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr2:153310400-153312200	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr2:153310400-153312400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr2:153310400-153312600	Enhancers	Brain Anterior Caudate	brain
39	chr2:153310400-153312800	Weak transcription	NH-A	brain
40	chr2:153310400-153313200	Enhancers	Brain Hippocampus Middle	brain
41	chr2:153310400-153313400	Enhancers	Brain Cingulate Gyrus	brain
42	chr2:153310400-153314000	Weak transcription	Adipose Nuclei	Adipose
43	chr2:153310400-153317000	Enhancers	Brain Substantia Nigra	brain
44	chr2:153310400-153318400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr2:153310600-153312000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr2:153310600-153312600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr2:153310600-153313000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:153311000-153312000	Enhancers	Ovary	ovary
49	chr2:153311200-153311800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr2:153311200-153311800	Enhancers	Lung	lung

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