Variant report

Variant	rs16831163
Chromosome Location	chr2:153328352-153328353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153328146..153330092-chr2:153417447..153419357,2	K562	blood:
2	chr2:153326388..153330903-chr2:153339849..153343861,4	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10194603	0.81[YRI][hapmap]
rs6748954	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875291	chr2:153251742-153339823	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1013777	chr2:153273637-153538546	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv2754362	chr2:153297577-153366129	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv875292	chr2:153308471-153357383	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2830258	chr2:153318339-153349165	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153320600-153328400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:153320800-153329400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:153320800-153331600	Enhancers	Hela-S3	cervix
4	chr2:153321000-153329600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:153322800-153329200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:153324200-153329000	Weak transcription	Right Ventricle	heart
7	chr2:153324400-153331000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:153324600-153330800	Enhancers	Fetal Intestine Small	intestine
9	chr2:153324800-153340000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:153325200-153329000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:153325800-153330000	Enhancers	Small Intestine	intestine
12	chr2:153326000-153328600	Enhancers	Fetal Kidney	kidney
13	chr2:153326000-153329000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr2:153326000-153329000	Enhancers	A549	lung
15	chr2:153326000-153329800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr2:153326000-153330000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr2:153326000-153330800	Enhancers	Stomach Mucosa	stomach
18	chr2:153326000-153331600	Enhancers	Brain Cingulate Gyrus	brain
19	chr2:153326200-153329000	Weak transcription	Colonic Mucosa	Colon
20	chr2:153326200-153329000	Weak transcription	Pancreas	Pancrea
21	chr2:153326200-153330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:153326200-153330600	Weak transcription	Lung	lung
23	chr2:153326200-153332600	Weak transcription	Adipose Nuclei	Adipose
24	chr2:153326200-153333000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:153326200-153334200	Enhancers	Brain Anterior Caudate	brain
26	chr2:153326200-153339200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:153326200-153345800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:153326600-153329000	Weak transcription	NHEK	skin
29	chr2:153326800-153329000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr2:153326800-153329000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:153326800-153329000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:153326800-153329000	Weak transcription	Spleen	Spleen
33	chr2:153326800-153329600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr2:153326800-153330200	Enhancers	Rectal Smooth Muscle	rectum
35	chr2:153327000-153328600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:153327000-153329600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr2:153327200-153329000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr2:153327200-153329000	Enhancers	Fetal Stomach	stomach
39	chr2:153327200-153329400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr2:153327200-153329400	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr2:153327200-153329400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr2:153327200-153329600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr2:153327200-153330800	Enhancers	Fetal Intestine Large	intestine
44	chr2:153327200-153330800	Enhancers	Fetal Lung	lung
45	chr2:153327400-153329200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr2:153327400-153329400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr2:153327400-153329400	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr2:153327400-153329400	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr2:153327400-153331400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr2:153327600-153328800	Enhancers	Fetal Heart	heart

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