Variant report

Variant	rs16831335
Chromosome Location	chr3:160390481-160390482
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73877933	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv877703	chr3:160325458-160398885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160385200-160395000	Weak transcription	Colonic Mucosa	Colon
2	chr3:160385400-160391200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr3:160386200-160393400	Weak transcription	Fetal Intestine Large	intestine
4	chr3:160386400-160391400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:160389400-160390600	Weak transcription	Stomach Mucosa	stomach
6	chr3:160389400-160393400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:160389400-160395200	Weak transcription	Pancreas	Pancrea
8	chr3:160389400-160395400	Weak transcription	Small Intestine	intestine
9	chr3:160389600-160390800	Enhancers	Liver	Liver
10	chr3:160390000-160390800	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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