Variant report

Variant	rs16831340
Chromosome Location	chr3:160395906-160395907
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160392050..160395141-chr3:160395142..160398552,4	K562	blood:
2	chr3:160395173..160398062-chr3:160414143..160415987,2	K562	blood:
3	chr3:160395405..160397806-chr3:160539467..160541973,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207084	Chromatin interaction
ENSG00000179674	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11920410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11925767	1.00[AMR][1000 genomes]
rs6805038	1.00[AMR][1000 genomes]
rs73877933	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv877703	chr3:160325458-160398885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160393400-160397000	Enhancers	HMEC	breast
2	chr3:160393400-160397200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:160393400-160397400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:160394200-160397400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:160394400-160396800	Enhancers	HUVEC	blood vessel
6	chr3:160394400-160397400	Active TSS	Stomach Mucosa	stomach
7	chr3:160394600-160396200	Flanking Active TSS	A549	lung
8	chr3:160394600-160397400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:160394800-160396400	Enhancers	Fetal Kidney	kidney
10	chr3:160394800-160396400	Enhancers	NHLF	lung
11	chr3:160394800-160396600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:160394800-160396600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:160394800-160397800	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr3:160395000-160396600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:160395000-160396600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:160395000-160397200	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr3:160395000-160397400	Active TSS	Colonic Mucosa	Colon
18	chr3:160395000-160397600	Active TSS	Rectal Mucosa Donor 31	rectum
19	chr3:160395000-160398000	Active TSS	Duodenum Mucosa	Duodenum
20	chr3:160395200-160396200	Enhancers	HepG2	liver
21	chr3:160395200-160396800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:160395200-160397000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:160395200-160397000	Active TSS	Pancreas	Pancrea
24	chr3:160395200-160397400	Active TSS	Rectal Smooth Muscle	rectum
25	chr3:160395200-160397600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr3:160395200-160397800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr3:160395400-160396000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:160395400-160396400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:160395400-160396400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:160395400-160396600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr3:160395400-160396600	Enhancers	Fetal Lung	lung
32	chr3:160395400-160397000	Enhancers	Fetal Muscle Leg	muscle
33	chr3:160395600-160396000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr3:160395600-160396200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr3:160395600-160396200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr3:160395600-160396200	Enhancers	Fetal Intestine Large	intestine
37	chr3:160395600-160396200	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr3:160395600-160397200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr3:160395600-160397400	Enhancers	NHEK	skin
40	chr3:160395600-160397800	Enhancers	Hela-S3	cervix
41	chr3:160395600-160401600	Weak transcription	Gastric	stomach
42	chr3:160395600-160401800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr3:160395800-160396200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr3:160395800-160396200	Active TSS	Fetal Stomach	stomach
45	chr3:160395800-160396200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:160395800-160396600	Active TSS	Fetal Intestine Small	intestine
47	chr3:160395800-160396600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:160395800-160396800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:160395800-160396800	Weak transcription	Small Intestine	intestine
50	chr3:160395800-160400200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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