Variant report

Variant	rs16831960
Chromosome Location	chr2:190617700-190617701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190615675..190618614-chr2:190648414..190651811,3	K562	blood:
2	chr2:190617143..190618720-chr2:190648807..190650350,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064933	Chromatin interaction
ENSG00000128699	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1046196	0.87[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1225115	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1233285	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233290	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1440006	0.89[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2254146	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2352707	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2352709	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3791778	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3791779	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5742924	0.80[AFR][1000 genomes]
rs5742955	0.87[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs5742962	0.87[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs5742965	0.86[AFR][1000 genomes]
rs5742976	0.86[AFR][1000 genomes]
rs5742991	0.86[AFR][1000 genomes]
rs5742993	0.87[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs5742997	0.86[AFR][1000 genomes]
rs6750293	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7579156	0.80[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16831960	ORMDL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190540800-190618400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:190550800-190626800	Weak transcription	Right Ventricle	heart
3	chr2:190576800-190627000	Weak transcription	Pancreas	Pancrea
4	chr2:190577000-190622600	Weak transcription	Aorta	Aorta
5	chr2:190583000-190626800	Weak transcription	Psoas Muscle	Psoas
6	chr2:190589400-190626600	Weak transcription	HUVEC	blood vessel
7	chr2:190594800-190627000	Weak transcription	Gastric	stomach
8	chr2:190597800-190626600	Weak transcription	Fetal Heart	heart
9	chr2:190599000-190626800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr2:190601400-190626800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:190602400-190626400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:190603800-190626800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:190605000-190626800	Weak transcription	Fetal Brain Male	brain
14	chr2:190607000-190619200	Weak transcription	NHDF-Ad	bronchial
15	chr2:190607000-190626800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr2:190607000-190626800	Weak transcription	NH-A	brain
17	chr2:190607400-190626800	Weak transcription	HSMMtube	muscle
18	chr2:190607800-190621000	Strong transcription	Liver	Liver
19	chr2:190607800-190622400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr2:190608400-190620200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr2:190608600-190626200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr2:190609600-190626600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr2:190609600-190627000	Weak transcription	Small Intestine	intestine
24	chr2:190609800-190620400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:190609800-190626200	Weak transcription	HMEC	breast
26	chr2:190610000-190626800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr2:190610200-190627000	Weak transcription	Lung	lung
28	chr2:190610200-190627000	Weak transcription	Spleen	Spleen
29	chr2:190610400-190626200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:190610400-190626800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr2:190610400-190626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr2:190610400-190627000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:190610800-190617800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:190610800-190620200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr2:190611200-190620200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr2:190611200-190620200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr2:190611200-190625800	Weak transcription	NHEK	skin
38	chr2:190611400-190626600	Weak transcription	NHLF	lung
39	chr2:190611800-190620200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr2:190611800-190620200	Strong transcription	Fetal Muscle Leg	muscle
41	chr2:190611800-190626000	Weak transcription	HepG2	liver
42	chr2:190613000-190619000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr2:190613200-190618400	Weak transcription	GM12878-XiMat	blood
44	chr2:190613200-190622600	Weak transcription	Fetal Stomach	stomach
45	chr2:190613200-190626200	Weak transcription	A549	lung
46	chr2:190613200-190626800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr2:190613200-190626800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr2:190613200-190626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr2:190613200-190626800	Weak transcription	Brain Substantia Nigra	brain
50	chr2:190613200-190626800	Weak transcription	Colonic Mucosa	Colon

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