Variant report

Variant	rs16832209
Chromosome Location	chr2:190848328-190848329
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11684699	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11895934	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11900530	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35299577	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4853626	0.86[GIH][hapmap]
rs56208642	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6760285	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72905390	0.95[EUR][1000 genomes]
rs72905399	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72905401	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72907308	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72907398	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72907401	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7564968	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875618	chr2:190789387-190883360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs16832209	ORMDL1	cis	multi-tissue	Pritchard
rs16832209	PMS1	cis	cerebellum	SCAN
rs16832209	ASNSD1	cis	cerebellum	SCAN
rs16832209	PMS1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190847200-190848400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr2:190847600-190848400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:190847600-190848400	ZNF genes & repeats	Esophagus	oesophagus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links