Variant report

Variant	rs16832738
Chromosome Location	chr1:161231904-161231905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11265584	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs12091289	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs4477295	0.94[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161229400-161234800	Weak transcription	Ovary	ovary
2	chr1:161231000-161232000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
3	chr1:161231200-161235400	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:161231400-161232000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:161231400-161232400	Enhancers	Fetal Stomach	stomach
6	chr1:161231400-161232600	Enhancers	Rectal Smooth Muscle	rectum
7	chr1:161231400-161233000	Weak transcription	Lung	lung
8	chr1:161231400-161235000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:161231600-161235000	Weak transcription	Placenta	Placenta
10	chr1:161231600-161235800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:161231600-161236000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:161231800-161232600	Enhancers	GM12878-XiMat	blood
13	chr1:161231800-161235200	Weak transcription	Fetal Heart	heart
14	chr1:161231800-161235800	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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