Variant report

Variant	rs16833109
Chromosome Location	chr1:151236361-151236362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151227043..151228858-chr1:151234009..151236435,4	MCF-7	breast:
2	chr1:151161317..151163856-chr1:151235890..151237991,2	MCF-7	breast:
3	chr1:151234999..151238320-chr1:151251915..151256083,5	MCF-7	breast:
4	chr1:151234387..151237177-chr1:151238975..151242676,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143373	Chromatin interaction
ENSG00000159352	Chromatin interaction
ENSG00000163159	Chromatin interaction
ENSG00000232671	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11800088	1.00[AMR][1000 genomes]
rs11800715	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11804061	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11804474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806302	1.00[AMR][1000 genomes]
rs11809569	1.00[AMR][1000 genomes]
rs11809979	1.00[AMR][1000 genomes]
rs11811310	1.00[AMR][1000 genomes]
rs12757785	1.00[ASW][hapmap]
rs16832965	1.00[AMR][1000 genomes]
rs16832968	1.00[AMR][1000 genomes]
rs16832988	1.00[AMR][1000 genomes]
rs16833008	1.00[AMR][1000 genomes]
rs16833052	1.00[AMR][1000 genomes]
rs16833054	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs16833100	1.00[ASW][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34570433	1.00[AMR][1000 genomes]
rs41445244	1.00[AMR][1000 genomes]
rs6657146	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
5	nsv831559	chr1:151109459-151239921	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv831570	chr1:151129020-151281778	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	106 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151228200-151236400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:151228200-151237000	Weak transcription	Fetal Kidney	kidney
3	chr1:151228400-151236400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:151228400-151236400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:151228400-151236400	Weak transcription	Aorta	Aorta
6	chr1:151228400-151236400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:151228400-151236400	Weak transcription	HSMMtube	muscle
8	chr1:151228400-151236400	Weak transcription	NHDF-Ad	bronchial
9	chr1:151228400-151236600	Weak transcription	Pancreas	Pancrea
10	chr1:151228400-151238200	Weak transcription	Small Intestine	intestine
11	chr1:151228400-151238400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:151228400-151244000	Weak transcription	Right Atrium	heart
13	chr1:151228400-151253400	Weak transcription	Fetal Brain Male	brain
14	chr1:151228600-151236400	Weak transcription	Primary B cells from cord blood	blood
15	chr1:151228600-151236400	Weak transcription	Brain Angular Gyrus	brain
16	chr1:151228600-151236400	Weak transcription	Esophagus	oesophagus
17	chr1:151228600-151236400	Weak transcription	K562	blood
18	chr1:151228600-151236400	Weak transcription	NHLF	lung
19	chr1:151228600-151236600	Weak transcription	HUVEC	blood vessel
20	chr1:151228600-151237000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:151228600-151237000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr1:151228600-151237000	Weak transcription	HepG2	liver
23	chr1:151228600-151237400	Weak transcription	Right Ventricle	heart
24	chr1:151228600-151238000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr1:151228600-151244400	Weak transcription	Fetal Heart	heart
26	chr1:151230400-151237400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr1:151230600-151244400	Strong transcription	Fetal Stomach	stomach
28	chr1:151231200-151243200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:151231800-151238200	Weak transcription	Psoas Muscle	Psoas
30	chr1:151231800-151243400	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:151232800-151244400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:151232800-151244400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:151233800-151242800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr1:151233800-151243200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr1:151233800-151244400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr1:151234000-151236600	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr1:151234000-151240600	Strong transcription	Dnd41	blood
38	chr1:151234000-151240600	Strong transcription	HMEC	breast
39	chr1:151234000-151240800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr1:151234000-151240800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr1:151234000-151241800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr1:151234000-151243200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:151234000-151244400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr1:151234000-151245000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr1:151234200-151240000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:151234200-151240200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr1:151234200-151241400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr1:151234200-151243200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr1:151234200-151243200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:151234200-151244000	Strong transcription	Fetal Muscle Leg	muscle

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